PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G041800.1
Common NameB456_003G041800, LOC105787816
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 324aa    MW: 36010.4 Da    PI: 7.8977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G041800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12122172154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +r+ h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i   A++++k L
  Gorai.003G041800.1 122 QRMIHIAVERNRRRQMNDYLAVLRTMMPNS---YVQRGDQASIIGGAINFVKVL 172
                         6999**************************...9***************99977 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.04E-12120177No hitNo description
PROSITE profilePS5088814.437121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16121187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-12123185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-9127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALEAVVFQR DPFCYGGSGP CNTYGVGFQQ QEEKANYSNN GEMVSKSGGG GTRGSSSSSF  60
MVHQTLKEWP WDFNSSSSPD IGFSTGGPIF SPTEAPAIDT RSCRRRRRRP KSVKNKEEIE  120
NQRMIHIAVE RNRRRQMNDY LAVLRTMMPN SYVQRGDQAS IIGGAINFVK VLEQILQSLE  180
ARKRMEKRSD STTFSSLFSD FFSFPQYSTS IQTETPGEST AEKWSFPSCS SSSSVADVEV  240
TMVDSHANVK ILSKKHPKQL FNMVSGLHSL GLFVLHLNVT SVENRVLYSL SVKVEENCQL  300
NTVNEIAAAV YEMVDKFQEE AAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RSCRRRRRR
2122133RMIHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469829.10.0PREDICTED: transcription factor bHLH94-like
RefseqXP_012469830.10.0PREDICTED: transcription factor bHLH94-like
RefseqXP_012469831.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A0D2QN330.0A0A0D2QN33_G
STRINGVIT_07s0191g00240.t012e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2217045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-68bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]